TY - JOUR
T1 - An international collaboration to standardize HIV-2 viral load assays
T2 - Results from the 2009 ACHI EV 2E quality control study
AU - Damond, F.
AU - Benard, A.
AU - Balotta, Claudia
AU - Böni, Jürg
AU - Cotten, Matthew
AU - Duque, Vitor
AU - Ferns, Bridget
AU - Garson, Jeremy
AU - Gomes, Perpetua
AU - Gonçalves, Fátima
AU - Gottlieb, Geoffrey
AU - Kupfer, Bernd
AU - Ruelle, Jean
AU - Rodes, Berta
AU - Soriano, Vicente
AU - Wainberg, Mark
AU - Taieb, Audrey
AU - Matheron, Sophie
AU - Chene, Genevieve
AU - Brun-Vezinet, Francoise
PY - 2011/10
Y1 - 2011/10
N2 - Accurate HIV-2 plasma viral load quantification is crucial for adequate HIV-2 patient management and for the proper conduct of clinical trials and international cohort collaborations. This study compared the homogeneity of HIV-2 RNA quantification when using HIV-2 assays from ACHI EV 2E study sites and either in-house PCR calibration standards or common viral load standards supplied to all collaborators. Each of the 12 participating laboratories quantified blinded HIV-2 samples, using its own HIV-2 viral load assay and standard as well as centrally validated and distributed common HIV-2 group A and B standards (http://www.hiv .lanl.gov/content/sequence/ HelpDocs/subtypes-more.html). Aliquots of HIV-2 group A and B strains, each at 2 theoretical concentrations (2.7 and 3.7 log 10 copies/ml), were tested. Intralaboratory, interlaboratory, and overall variances of quantification results obtained with both standards were compared using F tests. For HIV-2 group A quantifications, overall and interlaboratory and/or intralaboratory variances were significantly lower when using the common standard than when using in-house standards at the concentration levels of 2.7 log 10 copies/ml and 3.7 log 10 copies/ml, respectively. For HIV-2 group B, a high heterogeneity was observed and the variances did not differ according to the type of standard used. In this international collaboration, the use of a common standard improved the homogeneity of HIV-2 group A RNA quantification only. The diversity of HIV-2 group B, particularly in PCR primer-binding regions, may explain the heterogeneity in quantification of this strain. Development of a validated HIV-2 viral load assay that accurately quantifies distinct circulating strains is needed.
AB - Accurate HIV-2 plasma viral load quantification is crucial for adequate HIV-2 patient management and for the proper conduct of clinical trials and international cohort collaborations. This study compared the homogeneity of HIV-2 RNA quantification when using HIV-2 assays from ACHI EV 2E study sites and either in-house PCR calibration standards or common viral load standards supplied to all collaborators. Each of the 12 participating laboratories quantified blinded HIV-2 samples, using its own HIV-2 viral load assay and standard as well as centrally validated and distributed common HIV-2 group A and B standards (http://www.hiv .lanl.gov/content/sequence/ HelpDocs/subtypes-more.html). Aliquots of HIV-2 group A and B strains, each at 2 theoretical concentrations (2.7 and 3.7 log 10 copies/ml), were tested. Intralaboratory, interlaboratory, and overall variances of quantification results obtained with both standards were compared using F tests. For HIV-2 group A quantifications, overall and interlaboratory and/or intralaboratory variances were significantly lower when using the common standard than when using in-house standards at the concentration levels of 2.7 log 10 copies/ml and 3.7 log 10 copies/ml, respectively. For HIV-2 group B, a high heterogeneity was observed and the variances did not differ according to the type of standard used. In this international collaboration, the use of a common standard improved the homogeneity of HIV-2 group A RNA quantification only. The diversity of HIV-2 group B, particularly in PCR primer-binding regions, may explain the heterogeneity in quantification of this strain. Development of a validated HIV-2 viral load assay that accurately quantifies distinct circulating strains is needed.
UR - http://www.scopus.com/inward/record.url?scp=80053517804&partnerID=8YFLogxK
U2 - 10.1128/JCM.02389-10
DO - 10.1128/JCM.02389-10
M3 - Article
C2 - 21813718
AN - SCOPUS:80053517804
SN - 0095-1137
VL - 49
SP - 3491
EP - 3497
JO - Journal of Clinical Microbiology
JF - Journal of Clinical Microbiology
IS - 10
ER -